Lab Schedule - Fall
2009
Labs
Meet in MBB 1340 (unless otherwise noted)
|
# |
Date (Thurs) |
Topics |
Exercises |
Answers |
Instructor |
|
1 |
Aug 27 |
Literature
Resources for Bioinformatics Note: This lab meets in Rm 32 Library |
Lab 1 |
|
Andrea Dinkelman |
|
2 |
Sept 3 |
NCBI - Sequence Databases & Tools ISU
Databases, Servers & Software |
Lab 2 |
|
Ben Lewis |
|
3 |
Sept 10 |
Pairwise Sequence Alignment Database Searching (BLAST) |
Lab 3 |
|
Usha Muppirala |
|
4 |
Sept 17 |
Multiple
Sequence Alignment (CLUSTAL, MultAlign) |
Lab 4 |
|
Usha Muppirala |
|
- |
Sept 24 |
Review & Independent Projects |
Review Study Guide #1 Answers |
||
|
5 |
Oct 1 |
Synthetic
Biology (SYNBIOS) |
Lab 5 |
|
Deepak
Reyon |
|
6 |
Oct 8 |
Gene & Regulatory Element Prediction (UCSC
Genome Browser) |
Lab
6 |
|
Ben Lewis |
|
7 |
Oct 15 |
Phylogenetic Analysis (CLUSTAL, PHYLIP) |
Lab 7 |
|
Ben Lewis |
|
8 |
Oct 22 |
Structure Databases & Visualization (PDB, PyMol,
KiNG) |
Lab 8 |
|
Deepak Reyon |
|
- |
Oct 29 |
Review & Independent Projects |
Review Study Guide #2
Answers |
||
|
9 |
Nov 5 |
Protein Structure Prediction RNA
Structure Prediction |
Lab 9 |
|
Ben Lewis |
|
10 |
Nov 12 |
Gene Function Prediction (Sequence-based,
Structure-based) |
Lab 10 |
|
Deepak Reyon |
|
11 |
Nov 19 |
Microarray Analysis
(Clustering Algorithms) |
Lab 11 |
|
Usha Muppirala |
|
12 |
Nov 26 |
Network Analysis Synthetic
Biology Redux |
Lab 12 |
|
Deepak Reyon |
|
|
Dec 3 |
NO LAB –
University Thanksgiving Break |
|||
|
- |
Dec 10 |
BCB 544 Team
Project Presentations |
|||